The problem with this is primarily that windows uses NTFS as it’s filesystem. Being proprietary, NTFS has never played well with Linux and installing it to an NTFS partition is regarded as a genuinely terrible idea. Converting partitions safely is nearly impossible to do in place.
It may be inherently flawed, but we can’t just arbitrarily emit wavelengths of light with current technology. Realistically I doubt we ever could, we would need to alter the emission energies of materials on the fly, which would be akin to actual magic. It is frankly amazing it works as well as it does notwithstanding.